PubMed Tools

Code

cookbook/tools/pubmed_tools.py

from agno.agent import Agent
from agno.tools.pubmed import PubMedTools

agent = Agent(
    tools=[PubMedTools()],
    show_tool_calls=True,
    markdown=True,
)
agent.print_response("Find recent research papers about COVID-19 vaccines")

Usage

1. Create a virtual environment

   Open the Terminal and create a python virtual environment.

   Mac

   python3 -m venv .venv
   source .venv/bin/activate
   
2. Set your API key

   export OPENAI_API_KEY=xxx
   
3. Install libraries

   pip install -U biopython openai agno
   
4. Run Agent

   Mac

   python cookbook/tools/pubmed_tools.py